ECOLOGY 231/POPULATION BIOLOGY 231

Quantitative Methods in Population Biology

Fall 2007-note first class on 10/2


A tentative course schedule is below. The text is "Population Biology" by Hastings.  The book "Mathematical Models in Biology" by Edelstein-Keshet  will be on reserve for the course.  I will also try and get out via e-mail notes (perhaps scanned versions or perhaps retyped versions).   Grading will be based on homework assignments (70%) and a take home final (30%). The lecture schedule is tentative because my goal here is to teach and not to lecture.   Class is 1:40-3:00 P.M. in 1344 Storer Hall.

Instructor: Alan Hastings, 3136AWickson 2-8116 email:amhastings@ucdavis.edu


ASSIGNMENTS

These will be sent via e-mail using the class e-mail list.

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SYLLABUS

DATE
TOPIC
READING IN EDELSTEIN-KESHET
READING IN HASTINGS
9/27 NO CLASS -- first meeting will be on 10/2
10/2
introduction, model formulation
pages 3-11
Pages 1-5
10/4
qualitative behavior of difference equations using linear algebra-part 1
pages 12-21
 
Pages 9-38
 
10/9
qualitative behavior of difference equations using linear algebra-part 2
10/11 Complex eigenvalues, steady states, stability of difference equations< Pages 22-25, 39-44 Pages 41-60
10/16 More on the use of eigenvalues
10/18
more on steady states and stability of difference equations
pages 55-60
Pages 181-188
10/23
Nicholson-Bailey dynamics
10/25
chaos and all that
pages 46-55
Pages 96-101
10/30
model formulation and dimensional analysis
pages 113-128
Pages 81-87
10/1
steady states and stability of differential equations
pp. 128-145
Pages 87-92;119-128
11/6
linearization and linear systems for differential equations
11/8
phase plane methods
pages 164-186
Pages 129-180; 189-200

for both lectures

11/13
qualitative behavior of differential equations
pages 186-199
11/15 more on dynamics of differential equations
11/20
review of functions of several variables & the diffusion equation
pp. 385-395
11/27
the diffusion equation-part 2
pages 406-410, 437- 441,447-452
11/29
Diffusion equations-part 3
12/4
Diffusion equations-part 4

12/6
Review
 

 
12/14
FINAL EXAM DUE-5 PM (tentative)

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Books on reserve in Shields library for the course

#
Author Title Loan Period Call Number Course URL/Web Address Instructor Lib/Items
1 Nisbet, R. M. Modelling fluctuating populations / Z30 001188598000010 SRESV CLASS BOOK 20 00000 Y UCD60-001213089 0 QH352 .N57 Book Shields Reserves Course Reserves Two Hour Loan
QH352 .N57

QH352 .N57 ECL231
Hastings
2 Murray, J. D. (James Dickson) Mathematical biology / Z30 002150665000010 SRESV CLASS BOOK 20 00000 Y UCD60-002125388 0 QH323.5 .M88 2002 Book Shields Reserves Course Reserves Two Hour Loan
QH323.5 .M88 2002

QH323.5 .M88 2002 ECL231
Hastings
3 Kot, Mark, 1956- Elements of mathematical ecology / Z30 001954348000010 SRESV CLASS BOOK 20 00000 Y UCD60-001987687 0 QH352 .K66 2001 Book Shields Reserves Course Reserves Two Hour Loan
QH352 .K66 2001

QH352 .K66 2001 ECL231
Hastings
4 Murray, J. D. (James Dickson) Mathematical biology / Z30 002150665000010 SRESV CLASS BOOK 20 00000 Y UCD60-002125388 0 QH323.5 .M88 2002 Book Shields Reserves Course Reserves Two Hour Loan
QH323.5 .M88 2002

QH323.5 .M88 2002 ECL231
Hastings
5 Edelstein-Keshet, Leah. Mathematical models in biology / Z30 001171004000010 SHLDS GEN BOOK 01 00000 N UCD60-001195393 0 QH323.5 .E34 1988 Book Shields Library Regular Loan
Z30 001171004000020 SRESV CLASS BOOK 20 00000 Y UCD60-001195394 0 QH323.5 .E34 1988 Book Shields Reserves Course Reserves Two Hour Loan
QH323.5 .E34 1988

More locations
QH323.5 .E34 1988 ECL231
Hastings
6 Edelstein-Keshet, Leah. Mathematical models in biology / Z30 001171004000010 SHLDS GEN BOOK 01 00000 N UCD60-001195393 0 QH323.5 .E34 1988 Book Shields Library Regular Loan
Z30 001171004000020 SRESV CLASS BOOK 20 00000 Y UCD60-001195394 0 QH323.5 .E34 1988 Book Shields Reserves Course Reserves Two Hour Loan
QH323.5 .E34 1988

More locations
QH323.5 .E34 1988 ECL231
Hastings
7 Edelstein-Keshet, Leah. Mathematical models in biology / Z30 001171004000010 SHLDS GEN BOOK 01 00000 N UCD60-001195393 0 QH323.5 .E34 1988 Book Shields Library Regular Loan
Z30 001171004000020 SRESV CLASS BOOK 20 00000 Y UCD60-001195394 0 QH323.5 .E34 1988 Book Shields Reserves Course Reserves Two Hour Loan
QH323.5 .E34 1988

More locations
QH323.5 .E34 1988 ECL231
Hastings
8 Kot, Mark, 1956- Elements of mathematical ecology / Z30 001954348000010 SRESV CLASS BOOK 20 00000 Y UCD60-001987687 0 QH352 .K66 2001 Book Shields Reserves Course Reserves Two Hour Loan
QH352 .K66 2001

QH352 .K66 2001 ECL231
Hastings

 


 

 

SOME HANDY URL'S that could be used to go beyond what is in the class

To get xpp, THE dynamical system tool for x-windows and unix, (and also read a nice review of why we do what we do here, rather than all just do cellular automata) : http://www.pitt.edu/~phase/

 

There are installation instructions for windows.